6S5S
Cfucosylated second generation peptide dendrimer SBD8 bound to Fucose binding Lectin LecB (PA-IIL) from Pseudomonas aeruginosa at 1.43 Angstrom resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2018-07-06 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.000033 |
Spacegroup name | P 6 2 2 |
Unit cell lengths | 106.297, 106.297, 57.090 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.517 - 1.433 |
R-factor | 0.1636 |
Rwork | 0.163 |
R-free | 0.17850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1oxc |
RMSD bond length | 0.017 |
RMSD bond angle | 1.564 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.1) |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.517 | 1.440 |
High resolution limit [Å] | 1.433 | 1.433 |
Rmeas | 0.170 | 0.207 |
Number of reflections | 66042 | 10408 |
<I/σ(I)> | 14.8 | 0.73 |
Completeness [%] | 99.5 | 99.7 |
Redundancy | 17.1 | 5.5 |
CC(1/2) | 0.999 | 0.247 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | 0.1 M BIS-TRIS pH 6.5, 3.0 M Sodium chloride |