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6S5R

Cfucosylated second generation peptide dendrimer SBD6 bound to Fucose binding Lectin LecB (PA-IIL) from Pseudomonas aeruginosa at 2.08 Angstrom resolution, incomplete structure

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]80
Detector technologyPIXEL
Collection date2017-09-23
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1.000033
Spacegroup nameP 61 2 2
Unit cell lengths91.003, 91.003, 315.583
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution45.036 - 2.076
R-factor0.2067
Rwork0.205
R-free0.23700
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1oxc
RMSD bond length0.013
RMSD bond angle1.161
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER (2.7.16)
Refinement softwarePHENIX (1.11.1_2575)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.0362.086
High resolution limit [Å]2.0762.076
Rmeas0.2002.080
Number of reflections8811613946
<I/σ(I)>7.170.76
Completeness [%]99.698.2
Redundancy5.24.8
CC(1/2)0.9980.217
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.62910.2 M Potassium sodium tartrate tetrahydrate, 0.1 M Sodium citrate tribasic dihydrate pH 5.6, 2.0 M Ammonium sulfate

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