6S4D
Crystal Structure of the Homospermidine Synthase (HSS) variant W229F from Blastochloris viridis in Complex with NAD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 60.110, 110.009, 158.163 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 90.312 - 1.800 |
R-factor | 0.1751 |
Rwork | 0.173 |
R-free | 0.20790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4plp |
RMSD bond length | 0.010 |
RMSD bond angle | 0.847 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 90.312 | 1.600 |
High resolution limit [Å] | 1.570 | 1.570 |
Rmeas | 0.325 | |
Number of reflections | 134527 | 1408 |
<I/σ(I)> | 4.4 | |
Completeness [%] | 91.6 | |
Redundancy | 6.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.8 | 291 | Sodium acetate, Ammonium acetate, PEG 10000, NDSB-201, Agmatine sulfate |