6S3E
Crystal structure of helicase Pif1 from Thermus oshimai in apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-03 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9791 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 74.268, 59.408, 117.150 |
Unit cell angles | 90.00, 91.82, 90.00 |
Refinement procedure
Resolution | 36.710 - 3.787 |
R-factor | 0.2396 |
Rwork | 0.237 |
R-free | 0.29470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ftd |
RMSD bond length | 0.004 |
RMSD bond angle | 1.044 |
Data reduction software | XDS (Nov 1, 2016, built on 20170215) |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14rc1_3177: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.710 | 3.920 |
High resolution limit [Å] | 3.780 | 3.780 |
Rmerge | 0.141 | 1.121 |
Rmeas | 0.153 | 1.210 |
Rpim | 0.058 | 0.453 |
Number of reflections | 10098 | 738 |
<I/σ(I)> | 12.2 | 2.45 |
Completeness [%] | 96.7 | 70.4 |
Redundancy | 7.2 | 6.9 |
CC(1/2) | 0.996 | 0.810 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | Sodium Hepes-MOPS 0.1M Ethylene glycol 1.25% PEG 4000 20% Glycerol 20% |