6S1V
Crystal structure of dimeric M-PMV protease D26N mutant in complex with inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-03-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91841 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 49.947, 29.504, 85.390 |
Unit cell angles | 90.00, 101.71, 90.00 |
Refinement procedure
Resolution | 48.910 - 1.640 |
R-factor | 0.18006 |
Rwork | 0.179 |
R-free | 0.22018 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6s1u chain A |
RMSD bond length | 0.015 |
RMSD bond angle | 1.701 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0232) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.910 | 1.740 |
High resolution limit [Å] | 1.640 | 1.640 |
Rmerge | 0.043 | 0.826 |
Rmeas | 0.050 | 0.970 |
Number of reflections | 30408 | 4819 |
<I/σ(I)> | 14.36 | 1.37 |
Completeness [%] | 99.3 | 98.3 |
Redundancy | 3.65 | 3.56 |
CC(1/2) | 0.999 | 0.568 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 292 | Protein solution: 5.0 mg/mL protein with 1.4-fold molar excess (relative to dimeric protein) of Pro-0A1-Val-PSA-Ala-Met-Thr (inhibitor), 5 mM TCEP, 10 mM Tris buffer pH 7.4; Reservoir solution: 0.1 M sodium citrate buffer, 25% propan-2-ol, 5 mM TCEP; |