6S18
Ligand binding domain of the P. putida receptor PcaY_PP in complex with glycerol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-04 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.976 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 44.348, 67.768, 94.001 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.000 - 1.600 |
R-factor | 0.1659 |
Rwork | 0.165 |
R-free | 0.19080 |
Structure solution method | AB INITIO PHASING |
RMSD bond length | 0.018 |
RMSD bond angle | 1.450 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | Arcimboldo |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.000 | 1.657 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.045 | 0.732 |
Rmeas | 0.051 | 0.833 |
Rpim | 0.024 | 0.389 |
Number of reflections | 38133 | 3766 |
<I/σ(I)> | 17.86 | |
Completeness [%] | 99.7 | 99.42 |
Redundancy | 4.6 | 4.3 |
CC(1/2) | 0.999 | 0.605 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | COUNTER-DIFFUSION | 6.5 | 293 | 30% PEG 8000, 0.1M Na Acetate, 0.1M Na-Cacodylate pH 6.50 |