6RZ0
Crystal structure of Escherichia coli Glyoxalase II
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-27 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 59.382, 63.383, 72.726 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.783 - 1.100 |
R-factor | 0.1193 |
Rwork | 0.119 |
R-free | 0.12810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2qed |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.790 | 47.790 | 1.040 |
High resolution limit [Å] | 0.990 | 3.120 | 0.990 |
Rmerge | 0.059 | 0.055 | 0.382 |
Rmeas | 0.062 | 0.058 | 0.458 |
Rpim | 0.018 | 0.016 | 0.244 |
Total number of observations | 1447737 | 61202 | 24202 |
Number of reflections | 135359 | 5247 | 7792 |
<I/σ(I)> | 24.9 | 41.8 | 3.5 |
Completeness [%] | 87.4 | 99.8 | 35 |
Redundancy | 10.7 | 11.7 | 3.1 |
CC(1/2) | 0.999 | 0.997 | 0.813 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 10.5 | 277 | 0.1 M CAPS/NaOH pH 10.5, 0.2 M NaCl, 20% PEG 8000 |