6RYN
Structure of conglutinin carbohydrate recognition domain with GlcNAc-alpha-1-phosphate bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-05-13 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.827 |
Spacegroup name | P 43 |
Unit cell lengths | 50.278, 50.278, 52.192 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 1.000 |
R-factor | 0.1247 |
Rwork | 0.124 |
R-free | 0.14000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | pdbid 6RYJ |
RMSD bond length | 0.012 |
RMSD bond angle | 1.783 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.1.4) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.304 | 52.276 | 1.000 |
High resolution limit [Å] | 1.000 | 2.660 | 1.000 |
Rmerge | 0.040 | 0.030 | 0.389 |
Rmeas | 0.047 | 0.034 | 0.463 |
Total number of observations | 538352 | 40167 | 7243 |
Number of reflections | 70085 | 3636 | 985 |
<I/σ(I)> | 20.7 | 52.2 | 3.6 |
Completeness [%] | 99.7 | 94.9 | 99.9 |
Redundancy | 7.7 | 11 | 7.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 2.5 M ammonium sulfate, 0.1 M tris |