6RYM
Structure of carbohydrate recognition domain with GlcNAc bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SRS BEAMLINE PX10.1 |
Synchrotron site | SRS |
Beamline | PX10.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2004-06-05 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 1.488 |
Spacegroup name | P 43 |
Unit cell lengths | 50.225, 50.225, 51.925 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.106 - 1.460 |
R-factor | 0.1625 |
Rwork | 0.161 |
R-free | 0.18410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | pdbid 6RYJ |
RMSD bond length | 0.010 |
RMSD bond angle | 1.380 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.1.4) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0230) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.106 | 25.106 | 1.540 |
High resolution limit [Å] | 1.457 | 4.610 | 1.460 |
Rmerge | 0.036 | 0.035 | 0.121 |
Rmeas | 0.054 | 0.063 | 0.186 |
Total number of observations | 118264 | 4663 | 1857 |
Number of reflections | 18321 | 739 | 714 |
<I/σ(I)> | 31.5 | 36.3 | 8.4 |
Completeness [%] | 80.8 | 97.8 | 21.8 |
Redundancy | 6.5 | 6.3 | 2.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 2.5 M ammonium sulfate, 0.1 M tris |