6RYB
Structure of deubiquitinase for PR-ubiquitination 1 -Dup1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-06 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 87.259, 87.259, 612.618 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.589 - 2.315 |
R-factor | 0.2184 |
Rwork | 0.217 |
R-free | 0.24750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6b7p |
RMSD bond length | 0.008 |
RMSD bond angle | 0.938 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX ((1.12_2829: ???)) |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.590 | 2.398 |
High resolution limit [Å] | 2.315 | 2.315 |
Rmerge | 0.125 | 2.296 |
Rmeas | 0.128 | 2.348 |
Rpim | 0.027 | 0.488 |
Number of reflections | 62273 | 5993 |
<I/σ(I)> | 19.11 | |
Completeness [%] | 99.9 | |
Redundancy | 21.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 18 - 20 % PEG3350 / PEG4000, 100 mM HEPES pH 7.5, 200 mM Ammonium sulfate |