6RTX
Crystal structure of the Patched-1 (PTCH1) ectodomain 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97950 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 49.170, 65.680, 100.280 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.140 - 1.950 |
R-factor | 0.19929 |
Rwork | 0.196 |
R-free | 0.25696 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6rty |
RMSD bond length | 0.008 |
RMSD bond angle | 1.429 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.140 | 1.990 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.129 | |
Rpim | 0.055 | 0.525 |
Number of reflections | 24282 | 1168 |
<I/σ(I)> | 10.7 | 1.4 |
Completeness [%] | 100.0 | 99.1 |
Redundancy | 6.4 | 5.7 |
CC(1/2) | 0.998 | 0.316 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.1 M bicine/Trizma base pH 8.5, 0.03M of each ethylene glycol (diethyleneglycol, triethyleneglycol, tetraethyleneglycol and pentaethyleneglycol), 12.5% (v/v) MPD, 12.5% (w/v) PEG 1000, 12.5% (w/v) PEG 3350 |