6RR2
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an adenine derivative
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-11 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979257 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 62.769, 75.474, 118.358 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.400 - 1.991 |
R-factor | 0.2043 |
Rwork | 0.203 |
R-free | 0.22870 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.400 | 37.400 | 2.110 |
High resolution limit [Å] | 1.990 | 5.910 | 1.990 |
Rmerge | 0.038 | 0.027 | 0.298 |
Rmeas | 0.043 | 0.030 | 0.334 |
Total number of observations | 91369 | ||
Number of reflections | 19411 | 805 | 3073 |
<I/σ(I)> | 19.76 | 47.25 | 3.47 |
Completeness [%] | 98.8 | 96.9 | 99 |
Redundancy | 4.707 | 4.278 | 4.803 |
CC(1/2) | 0.999 | 0.998 | 0.973 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 5 | 291.15 | 30 mM NaBr, 220 mM Kcitrate, glycerol 6%, 15-16% w/v PEG400 |