Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6RKG

1.32 A RESOLUTION OF SPOROSARCINA PASTEURII UREASE INHIBITED IN THE PRESENCE OF NBPTO AT pH 7.5

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2018-11-09
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.979700
Spacegroup nameP 63 2 2
Unit cell lengths131.783, 131.783, 188.768
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution97.670 - 1.320
R-factor0.12275
Rwork0.122
R-free0.14254
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5ol4
RMSD bond length0.007
RMSD bond angle1.345
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareREFMAC
Refinement softwareREFMAC (5.8.0049)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]97.6701.340
High resolution limit [Å]1.3201.320
Rmerge0.1182.230
Rmeas0.1282.392
Rpim0.0350.633
Number of reflections22121710653
<I/σ(I)>13.31.5
Completeness [%]98.897.4
Redundancy13.213.8
CC(1/2)0.9990.653
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5293Protein dissolved in 50 mM HEPES, pH 7.5, 2 mM EDTA, 4 mM NBPTO. Precipitant solution consisting of 100 mM citrate buffer, 1.7-1.9 M ammonium sulfate, 4 mM NBPTO, at pH 7.5.

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon