6RC1
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an adenine derivative
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-05-13 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0017 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 62.614, 75.775, 118.658 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 63.864 - 2.540 |
R-factor | 0.2165 |
Rwork | 0.214 |
R-free | 0.26590 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.7.1) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.860 | 63.860 | 2.650 |
High resolution limit [Å] | 2.540 | 8.800 | 2.540 |
Rmerge | 0.165 | 0.056 | 1.375 |
Rmeas | 0.176 | 0.061 | 1.461 |
Rpim | 0.061 | 0.023 | 0.491 |
Total number of observations | 80201 | 1988 | 9987 |
Number of reflections | 9658 | 270 | 1173 |
<I/σ(I)> | 10 | 26.1 | 2.1 |
Completeness [%] | 100.0 | 99.5 | 100 |
Redundancy | 8.3 | 7.4 | 8.5 |
CC(1/2) | 0.996 | 0.997 | 0.857 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 5 | 291.15 | 30 mM NaBr, 220 mM Kcitrate, glycerol 6%, 15-16% w/v PEG400 |