6R26
The photosensory core module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) locked in a Pr-like state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2006-02-18 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97952 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 174.445, 174.445, 79.067 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.840 - 3.110 |
R-factor | 0.21895 |
Rwork | 0.216 |
R-free | 0.27618 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5i5l |
RMSD bond length | 0.004 |
RMSD bond angle | 1.402 |
Data reduction software | XDS (Nov 1, 2016) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.7.17) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.840 | 3.320 |
High resolution limit [Å] | 3.110 | 3.110 |
Rmerge | 0.083 | 0.356 |
Rmeas | 0.093 | 0.397 |
Rpim | 0.041 | 0.175 |
Number of reflections | 11232 | 1987 |
<I/σ(I)> | 16.3 | 5 |
Completeness [%] | 99.3 | 98.7 |
Redundancy | 9.4 | 9.4 |
CC(1/2) | 0.997 | 0.962 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.8 | 291 | 20-23% PEG 3350, 50 mM NaCl and 100 mM Tris/Cl, in 30% PEG 3350 as cryoprotectant |