6QTW
Crystal structure of an Arabidopsis WD40 domain in complex with a blue light photoreceptor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-13 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.03 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 48.620, 55.142, 103.155 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.980 - 1.390 |
R-factor | 0.1379 |
Rwork | 0.136 |
R-free | 0.17230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5igo |
RMSD bond length | 0.008 |
RMSD bond angle | 1.056 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.980 | 1.440 |
High resolution limit [Å] | 1.390 | 1.390 |
Rmeas | 0.056 | |
Number of reflections | 56339 | |
<I/σ(I)> | 11.78 | |
Completeness [%] | 99.9 | |
Redundancy | 12.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298.15 | 5 mg/mL of COP1 supplemented with 3 to 10 fold molar excess in peptide was mixed with two-fold (v/v) more mother liquor (1:2 ratio; protein:buffer) containing 1.25 M sodium malonate pH 7.5. |