6QJN
Crystal Structure of the third PDZ domain of PSD-95 protein D332G mutant: space group I4122
Replaces: 5OIJExperimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-06-28 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.96998 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 89.871, 89.871, 84.814 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.853 - 1.800 |
R-factor | 0.2074 |
Rwork | 0.205 |
R-free | 0.22690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3k82 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.850 | 19.850 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.078 | 0.039 | 0.427 |
Rmeas | 0.087 | 0.045 | 0.475 |
Rpim | 0.039 | 0.020 | 0.205 |
Total number of observations | 77217 | 640 | 4797 |
Number of reflections | 16272 | 142 | 942 |
<I/σ(I)> | 11.3 | 19.7 | 3.4 |
Completeness [%] | 99.3 | 89.4 | 99.8 |
Redundancy | 4.7 | 4.5 | 5.1 |
CC(1/2) | 0.996 | 0.999 | 0.896 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 298 | 0.1 M sodium citrate, 20% 2-Propanol, 20% PEG 4000, 5% Glycerol |