6QJE
Structure of human galactokinase 1 bound with 4-{[2-(Methylsulfonyl)-1H-imidazol-1-yl]methyl}-1,3-thiazole
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91587 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 73.703, 114.873, 121.044 |
Unit cell angles | 90.00, 100.56, 90.00 |
Refinement procedure
Resolution | 82.646 - 2.400 |
R-factor | 0.2196 |
Rwork | 0.217 |
R-free | 0.26900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1wuu |
RMSD bond length | 0.004 |
RMSD bond angle | 0.880 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.2) |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 82.650 | 82.650 | 2.150 |
High resolution limit [Å] | 2.400 | 6.440 | 2.040 |
Rmerge | 0.092 | 0.026 | 1.900 |
Rmeas | 0.110 | 0.031 | 2.256 |
Rpim | 0.059 | 0.017 | 1.206 |
Number of reflections | 126441 | 4082 | 18416 |
<I/σ(I)> | 7.5 | ||
Completeness [%] | 99.7 | 99 | 99.8 |
Redundancy | 3.5 | 3.3 | 3.4 |
CC(1/2) | 0.998 | 0.999 | 0.474 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M MOPS/sodium HEPES pH 7.0-7.5, 40-50 % Morpheus Precipitant Mix 4 (50% mix = 12.5% MPD, 12.5% PEG1000, 12.5% PEG3350), 0.1 M Morpheus Carboxylic acids mix (0.02M each of:sodium formate, ammonium acetate, sodium citrate tribasic dehydrate, sodium potassium tartrate tetrahydrate and sodium oxamate). |