6QIC
Crystal structure of DEAH-box ATPase Prp22-S837A with bound ssRNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97620 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 139.610, 139.960, 164.660 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 106.490 - 2.700 |
R-factor | 0.2146 |
Rwork | 0.212 |
R-free | 0.26140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6i3p |
RMSD bond length | 0.009 |
RMSD bond angle | 1.511 |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 106.490 | 106.490 | 2.820 |
High resolution limit [Å] | 2.700 | 50.000 | 2.700 |
Rmerge | 0.077 | 0.018 | 1.474 |
Rmeas | 0.081 | 0.022 | 1.561 |
Number of reflections | 88822 | 11 | 10719 |
<I/σ(I)> | 19.56 | 48.14 | 1.69 |
Completeness [%] | 99.7 | 55 | 99.8 |
Redundancy | 9.251 | 2.818 | 9.442 |
CC(1/2) | 1.000 | 1.000 | 0.705 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 100 mM Bis-Tris propane pH 8.5, 250 mM NaF, 22% (w/v) PEG3350 |