6Q83
Crystal structure of the biportin Pdr6 in complex with UBC9
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-05 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9779 |
Spacegroup name | H 3 2 |
Unit cell lengths | 198.260, 198.260, 289.630 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.565 - 4.530 |
R-factor | 0.2597 |
Rwork | 0.259 |
R-free | 0.27080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2GJD and 6Q82 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.565 | 49.565 | 4.650 |
High resolution limit [Å] | 4.530 | 20.260 | 4.530 |
Rmerge | 0.168 | 0.028 | 2.492 |
Rmeas | 0.178 | 0.030 | 2.638 |
Number of reflections | 12937 | 165 | 892 |
<I/σ(I)> | 11.16 | 60.66 | 0.92 |
Completeness [%] | 99.6 | 94.8 | 95.7 |
Redundancy | 10.072 | 9.109 | 9.225 |
CC(1/2) | 0.999 | 0.999 | 0.578 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.7 | 293 | Sodium cacodylate, magnesium chloride, ethanol |