6Q7E
Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with the NVP-BHG712 derivative ATDL14
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-04 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97625 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 32.868, 107.211, 40.516 |
Unit cell angles | 90.00, 108.85, 90.00 |
Refinement procedure
Resolution | 38.343 - 1.059 |
R-factor | 0.1926 |
Rwork | 0.192 |
R-free | 0.21150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6fnf |
RMSD bond length | 0.006 |
RMSD bond angle | 1.129 |
Data reduction software | XDS (XDSapp 2.0) |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((dev_3318: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.343 | 1.120 |
High resolution limit [Å] | 1.059 | 1.059 |
Rmeas | 0.189 | |
Number of reflections | 117213 | 18164 |
<I/σ(I)> | 5.85 | 0.26 |
Completeness [%] | 97.2 | 93.3 |
Redundancy | 6.52 | 6.08 |
CC(1/2) | 0.998 | 0.114 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 291 | 37.5% MPD_PEG1000_PEG3350, 100 mM Alanine, 100 mM Morpheus Buffer System 3 (Tris/Bicine) |