6Q4X
Structure of MPT-2, a GDP-Man-dependent mannosyltransferase from Leishmania mexicana
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 55.567, 98.607, 107.402 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 72.740 - 1.550 |
R-factor | 0.1436 |
Rwork | 0.140 |
R-free | 0.21091 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.575 |
Data reduction software | DIALS (1.8.2-g5331de77-release) |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 72.740 | 1.580 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.103 | 0.756 |
Rmeas | 0.113 | 0.859 |
Rpim | 0.045 | 0.395 |
Number of reflections | 84940 | 3419 |
<I/σ(I)> | 7.1 | |
Completeness [%] | 98.3 | 81.1 |
Redundancy | 5.9 | 3.9 |
CC(1/2) | 0.997 | 0.430 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 292 | 200 mM trisodium citrate, 18-22% w/v PEG 3350 |