6Q2U
Structure of Cytochrome C4 from Pseudomonas aeruginosa
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-31 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9201 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 61.408, 61.408, 173.262 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.120 - 1.850 |
R-factor | 0.1806 |
Rwork | 0.178 |
R-free | 0.21610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1m70 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.751 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.120 | 39.120 | 1.890 |
High resolution limit [Å] | 1.850 | 9.050 | 1.850 |
Rmerge | 0.149 | 0.096 | 2.120 |
Rmeas | 0.154 | 0.099 | 2.189 |
Rpim | 0.037 | 0.025 | 0.539 |
Total number of observations | 316544 | 2776 | 16413 |
Number of reflections | 17508 | 211 | 1029 |
<I/σ(I)> | 11.1 | 24.8 | 1.3 |
Completeness [%] | 100.0 | 98.8 | 99.4 |
Redundancy | 18.1 | 13.2 | 16 |
CC(1/2) | 0.994 | 0.997 | 0.743 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.2 | 296.15 | 0.2 M sodium chloride, 0.1 M sodium phosphate/citrate buffer pH 4.2, 18% PEG 8000 |