6Q2F
Structure of Rhamnosidase from Novosphingobium sp. PP1Y
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-14 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.979 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 80.809, 114.570, 158.797 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.699 - 2.200 |
R-factor | 0.163541015328 |
Rwork | 0.163 |
R-free | 0.17705 |
Structure solution method | SAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.027 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.700 | 2.250 |
High resolution limit [Å] | 2.200 | 2.200 |
Number of reflections | 144262 | 29836 |
<I/σ(I)> | 14.2 | 3.7 |
Completeness [%] | 99.9 | |
Redundancy | 6.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 0.1 M MES, pH 6.8, 6-7% Tascimate pH 5.0, 2-10 mM Tris, pH 7.5, 10 % w/w PEG 20K, 6-10% glycerol, and 0.01% NaN3 |