6PZ6
Co-assembly of VIQKI D452(beta-L-homoaspartic acid) with human parainfluenza virus type 3 (HPIV3) fusion glycoprotein N-terminal heptad repeat domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-06-08 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9786 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 39.640, 52.450, 55.620 |
Unit cell angles | 90.00, 99.20, 90.00 |
Refinement procedure
Resolution | 27.450 - 1.700 |
R-factor | 0.2298 |
Rwork | 0.228 |
R-free | 0.25450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6nro |
RMSD bond length | 0.005 |
RMSD bond angle | 0.631 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 27.450 | 1.730 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmeas | 0.049 | 1.940 |
Rpim | 0.018 | 0.698 |
Number of reflections | 24510 | 1206 |
<I/σ(I)> | 19.9 | 1 |
Completeness [%] | 98.4 | 98.29 |
Redundancy | 7.5 | 7.6 |
CC(1/2) | 0.999 | 0.552 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 298 | 30 mM NaF, 30 mM NaBr, 30 mM NaI, 100 mM HEPES/MOPS buffer (pH 7.5), 12.5% PEG1000, 12.5% PEG3350, 12.5% 2-methyl-2,4-pentanediol |