6PXS
Crystal structure of iminodiacetate oxidase (IdaA) from Chelativorans sp. BNC1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-08 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 113.457, 113.457, 266.119 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.842 - 2.836 |
R-factor | 0.2191 |
Rwork | 0.217 |
R-free | 0.24940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ryi |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.850 |
High resolution limit [Å] | 2.800 | 7.590 | 2.800 |
Rmerge | 0.479 | 0.055 | 5.985 |
Rmeas | 0.499 | 0.057 | 6.834 |
Rpim | 0.137 | 0.016 | 3.199 |
Total number of observations | 548682 | ||
Number of reflections | 43608 | 2434 | 2066 |
<I/σ(I)> | 2.7 | ||
Completeness [%] | 99.8 | 100 | 96.2 |
Redundancy | 12.6 | 13.2 | 4 |
CC(1/2) | 0.999 | 0.044 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.1 M tris pH 8.5, 0.2 M trimethylamine N-oxide dihydrate, 20% (w/v) PEG MME 2,000 |