6PH5
Binary product complex crystal structure of DNA polymerase Beta with an extra-helical template base
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-06-21 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 54.132, 79.116, 55.203 |
Unit cell angles | 90.00, 106.61, 90.00 |
Refinement procedure
Resolution | 22.596 - 2.602 |
R-factor | 0.2124 |
Rwork | 0.205 |
R-free | 0.27870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4klm |
RMSD bond length | 0.012 |
RMSD bond angle | 1.183 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 7.050 | 2.600 |
Rmerge | 0.118 | 0.037 | 0.823 |
Rmeas | 0.138 | 0.044 | 0.991 |
Rpim | 0.072 | 0.023 | 0.544 |
Total number of observations | 50488 | ||
Number of reflections | 13772 | 701 | 691 |
<I/σ(I)> | 6.6 | ||
Completeness [%] | 99.8 | 97 | 99.6 |
Redundancy | 3.7 | 3.6 | 3.2 |
CC(1/2) | 0.998 | 0.657 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 16-18% PEG 3350 |