6PGV
Human Josephin-2 in complex with ubiquitin
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X6A |
Synchrotron site | NSLS |
Beamline | X6A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-03-23 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.900, 0.9787, 0.9792, 0.9700, 1.0053, 1.0089 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 102.120, 102.120, 92.200 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.815 - 2.300 |
Rwork | 0.201 |
R-free | 0.22400 |
Structure solution method | MAD |
RMSD bond length | 0.002 |
RMSD bond angle | 0.498 |
Data reduction software | XDS (Jan 26, 2018) |
Data scaling software | XSCALE (Jan 26, 2018) |
Phasing software | PHENIX ((1.14_3260)) |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.058 | 0.990 |
Rmeas | 0.058 | 1.000 |
Rpim | 0.007 | 0.145 |
Number of reflections | 12866 | 1237 |
<I/σ(I)> | 81.6 | |
Completeness [%] | 98.3 | 97.4 |
Redundancy | 77 | 46.2 |
CC(1/2) | 1.000 | 0.949 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 4.6 | 293 | 0.1 M sodium acetate pH 4.6, 0.2 M CaCl2, 22.5% (w/v) PEG 6000; microbatch under Al's Oil |