6PCW
Human PIM1 bound to benzothiophene inhibitor 213
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-27 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97622 |
Spacegroup name | P 65 |
Unit cell lengths | 96.921, 96.921, 80.092 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 31.720 - 2.200 |
R-factor | 0.1768 |
Rwork | 0.174 |
R-free | 0.22600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ijp |
RMSD bond length | 0.008 |
RMSD bond angle | 1.512 |
Data reduction software | XDS (20190315) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 31.720 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.109 | 2.465 |
Rmeas | 0.111 | 2.526 |
Rpim | 0.025 | 0.553 |
Total number of observations | 444854 | 38500 |
Number of reflections | 21801 | 1867 |
<I/σ(I)> | 23.3 | 2 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 20.4 | 20.6 |
CC(1/2) | 1.000 | 0.828 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 25% PEG3350, 0.1 M TRIS pH8.5, 0.2 M magnesium chloride |