6PBH
Crystal Structure of HLA-A*68:01 in complex with NP145-156, a 12 mer influenza peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-07-12 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.954 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 59.750, 79.004, 112.651 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.670 - 1.890 |
R-factor | 0.197 |
Rwork | 0.195 |
R-free | 0.23400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4hwz |
RMSD bond length | 0.010 |
RMSD bond angle | 1.020 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.660 | 2.000 |
High resolution limit [Å] | 1.890 | 1.890 |
Rmerge | 0.098 | 0.679 |
Rmeas | 0.105 | 0.053 |
Rpim | 0.039 | 0.021 |
Total number of observations | 312069 | 45060 |
Number of reflections | 43283 | 6199 |
<I/σ(I)> | 13.3 | 3.3 |
Completeness [%] | 99.9 | 99.4 |
Redundancy | 7.2 | 7.3 |
CC(1/2) | 0.998 | 0.815 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 | 277 | 8-14%PEG3350, 0.1M NaCl, 0.1M Hepes pH 7.4, 20mM MgCl2, 5mM CdCl2 |