6PBD
DNA N6-Adenine Methyltransferase CcrM In Complex with Double-Stranded DNA Oligonucleotide Containing Its Recognition Sequence GAATC
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.683, 117.939, 119.598 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.675 - 2.343 |
R-factor | 0.1748 |
Rwork | 0.173 |
R-free | 0.20820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1g60 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.532 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.15.2_3472: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.680 | 2.430 |
High resolution limit [Å] | 2.343 | 2.343 |
Rmerge | 0.113 | 0.766 |
Rpim | 0.035 | 0.398 |
Number of reflections | 40730 | 3929 |
<I/σ(I)> | 19.7 | 1.9 |
Completeness [%] | 99.7 | 97.7 |
Redundancy | 10.2 | 4 |
CC(1/2) | 0.753 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.8 | 292 | 0.1 M HEPES, pH 7.8, 10% w/v PEG8000, 3% w/v PEG6000 |