Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6PBD

DNA N6-Adenine Methyltransferase CcrM In Complex with Double-Stranded DNA Oligonucleotide Containing Its Recognition Sequence GAATC

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2018-12-16
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.00000
Spacegroup nameP 21 21 21
Unit cell lengths67.683, 117.939, 119.598
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution41.675 - 2.343
R-factor0.1748
Rwork0.173
R-free0.20820
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1g60
RMSD bond length0.003
RMSD bond angle0.532
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX ((1.15.2_3472: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]41.6802.430
High resolution limit [Å]2.3432.343
Rmerge0.1130.766
Rpim0.0350.398
Number of reflections407303929
<I/σ(I)>19.71.9
Completeness [%]99.797.7
Redundancy10.24
CC(1/2)0.753
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.82920.1 M HEPES, pH 7.8, 10% w/v PEG8000, 3% w/v PEG6000

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon