6PAU
Structure of Human NMT2 with myristoyl-lysine peptide and CoA products
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-21 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 63.162, 46.350, 74.395 |
Unit cell angles | 90.00, 114.25, 90.00 |
Refinement procedure
Resolution | 67.831 - 1.930 |
R-factor | 0.1984 |
Rwork | 0.197 |
R-free | 0.21770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4c2x |
RMSD bond length | 0.007 |
RMSD bond angle | 0.877 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.590 | 1.999 |
High resolution limit [Å] | 1.930 | 1.930 |
Rmerge | 0.101 | 1.066 |
Rmeas | 0.112 | |
Number of reflections | 154166 | 15911 |
<I/σ(I)> | 11.35 | 1.54 |
Completeness [%] | 99.5 | 99.56 |
Redundancy | 5.2 | 5.3 |
CC(1/2) | 0.998 | 0.646 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 8 mg/mL protein in a buffer of 25 mM Tris-HCl pH 7.5, 120 mM NaCl, 1 mM DTT, 1 mM MgCl2, mixed 1:1 with well solution of 22% PEG 8000, 0.1 M Bis-Tris pH 6.5 |