6P7S
Crystal Structure of the Cedar henipavirus Attachment G Glycoprotein globular domain in complex with the receptor ephrin-B1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-06-10 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9192 |
Spacegroup name | P 65 |
Unit cell lengths | 207.570, 207.570, 119.377 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.940 - 3.490 |
R-factor | 0.1976 |
Rwork | 0.196 |
R-free | 0.22750 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.522 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.630 |
High resolution limit [Å] | 3.500 | 7.530 | 3.500 |
Rmerge | 0.150 | 0.082 | |
Rmeas | 0.158 | 0.086 | |
Rpim | 0.061 | 0.026 | 0.671 |
Total number of observations | 414726 | ||
Number of reflections | 37299 | 3818 | 3691 |
<I/σ(I)> | 5 | ||
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 11.1 | 10.7 | 11.1 |
CC(1/2) | 0.997 | 0.507 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | 100 mM Tris, pH 8.5, 20% PEG6000 |