6P7H
Vaccine-elicited NHP FP-targeting neutralizing antibody DF2F-b.04 in complex with HIV fusion peptide (residue 512-519)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 59.164, 62.219, 136.130 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.662 - 1.782 |
R-factor | 0.2019 |
Rwork | 0.201 |
R-free | 0.22990 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.756 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.15.2_3472: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.810 |
High resolution limit [Å] | 1.780 | 4.830 | 1.780 |
Rmerge | 0.105 | 0.058 | 0.792 |
Rmeas | 0.114 | 0.063 | 0.917 |
Rpim | 0.044 | 0.025 | 0.450 |
Total number of observations | 315917 | ||
Number of reflections | 48760 | 2645 | 2342 |
<I/σ(I)> | 8.9 | ||
Completeness [%] | 99.8 | 99.2 | 98.2 |
Redundancy | 6.5 | 6.3 | 3.5 |
CC(1/2) | 0.996 | 0.612 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 0.2M MgCl2, 0.1M HEPES pH 7.5, 17.5% PEG 400 |