6P7D
D104N S. typhimurium siroheme synthase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-11-20 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.096, 99.329, 147.421 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.280 - 2.400 |
R-factor | 0.1828 |
Rwork | 0.180 |
R-free | 0.25030 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.054 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.8.0) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.150 |
High resolution limit [Å] | 2.110 | 5.720 | 2.110 |
Rmerge | 0.233 | 0.118 | |
Rmeas | 0.243 | 0.122 | |
Rpim | 0.067 | 0.033 | |
Total number of observations | 464961 | ||
Number of reflections | 44327 | 2769 | 239 |
<I/σ(I)> | 6 | ||
Completeness [%] | 86.7 | 99.7 | 9.5 |
Redundancy | 10.5 | 13.6 | 1.1 |
CC(1/2) | 0.993 | 0.107 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 298 | 4-14% PEG 4000, 100 mM 2-(N-morpholino)ethanesulfonic acid (MES) pH 5.0, 500mM sodium chloride, 7 mM 2-Mercaptoethanol (BME), microseeded |