6P5V
Structure of DCN1 bound to N-((4S,5S)-7-ethyl-4-(4-fluorophenyl)-3-methyl-6-oxo-1-phenyl-4,5,6,7-tetrahydro-1H-pyrazolo[3,4-b]pyridin-5-yl)-3-methylbenzamide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-03-15 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.00232 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 35.310, 96.985, 60.072 |
Unit cell angles | 90.00, 106.09, 90.00 |
Refinement procedure
Resolution | 37.128 - 1.398 |
R-factor | 0.1728 |
Rwork | 0.171 |
R-free | 0.20490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5v86 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.450 |
High resolution limit [Å] | 1.400 | 3.020 | 1.400 |
Rmerge | 0.032 | 0.020 | 0.580 |
Rmeas | 0.038 | 0.024 | 0.682 |
Rpim | 0.019 | 0.012 | 0.354 |
Total number of observations | 259468 | ||
Number of reflections | 72513 | 7432 | 6995 |
<I/σ(I)> | 9.2 | ||
Completeness [%] | 94.8 | 95.8 | 91.8 |
Redundancy | 3.6 | 3.6 | 3.3 |
CC(1/2) | 0.999 | 0.784 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 277 | 7% PEG3350, 0.2M NH4Br |