6P53
Crystal structure of the transpeptidase domain of PBP2 from Neisseria gonorrhoeae in apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-02-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.334, 77.254, 88.007 |
Unit cell angles | 90.00, 91.85, 90.00 |
Refinement procedure
Resolution | 36.090 - 1.920 |
R-factor | 0.184 |
Rwork | 0.181 |
R-free | 0.22900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4u3t |
RMSD bond length | 0.010 |
RMSD bond angle | 1.437 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0218) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.090 | 1.950 |
High resolution limit [Å] | 1.920 | 1.920 |
Rmerge | 0.052 | 0.413 |
Rpim | 0.022 | 0.191 |
Number of reflections | 42141 | 2272 |
<I/σ(I)> | 33.9 | 3.3 |
Completeness [%] | 90.8 | 97.3 |
Redundancy | 6.3 | 5.4 |
CC(1/2) | 1.000 | 0.930 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9.3 | 291 | 40% PEG600, 0.1 M CHES |