6P3N
Tetrahydroprotoberberine N-methyltransferase in complex with S-adenosylmethionine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-01-11 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9800 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 104.023, 104.023, 82.746 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.560 - 1.600 |
R-factor | 0.17868 |
Rwork | 0.178 |
R-free | 0.19570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5kok |
RMSD bond length | 0.007 |
RMSD bond angle | 1.151 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.560 | 1.640 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmeas | 0.075 | 0.596 |
Number of reflections | 68160 | 4736 |
<I/σ(I)> | 11.59 | |
Completeness [%] | 98.9 | 94.1 |
Redundancy | 5.4 | 5 |
CC(1/2) | 0.998 | 0.799 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 298 | S-adenosyl methionine, pentaerythritol ethoxylate (15/4 EO/OH), Glycerol, Ammonium sulfate, Tris-Cl |