6P1D
Crystal structure of EGFR with mutant-selective dihydrodibenzodiazepinone allosteric inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-17 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 71.946, 101.812, 86.510 |
Unit cell angles | 90.00, 101.04, 90.00 |
Refinement procedure
Resolution | 65.170 - 2.400 |
R-factor | 0.1954 |
Rwork | 0.195 |
R-free | 0.21340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5d41 |
Data reduction software | DIALS |
Data scaling software | Aimless (0.6.3) |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 65.170 | 2.460 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.100 | 0.358 |
Rmeas | 0.118 | 0.426 |
Rpim | 0.062 | 0.229 |
Total number of observations | 167295 | 11646 |
Number of reflections | 47635 | 3483 |
<I/σ(I)> | 7.8 | 2.7 |
Completeness [%] | 99.5 | 99.2 |
Redundancy | 3.5 | 3.3 |
CC(1/2) | 0.993 | 0.880 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 298 | 0.1 M Bis-Tris, 29% PEG 3350, 5.0 mM TCEP |