6OXC
Structure of Mycobacterium tuberculosis methylmalonyl-CoA mutase with adenosyl cobalamin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 77.802, 103.561, 211.197 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.967 - 1.900 |
R-factor | 0.1639 |
Rwork | 0.162 |
R-free | 0.20190 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2req |
RMSD bond length | 0.011 |
RMSD bond angle | 1.244 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.100 | 1.930 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.126 | 0.887 |
Rmeas | 0.160 | 1.104 |
Number of reflections | 129672 | 6274 |
<I/σ(I)> | 7.9 | 1.7 |
Completeness [%] | 96.5 | 95.4 |
Redundancy | 4.1 | 4 |
CC(1/2) | 0.993 | 0.636 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 100 mM sodium cacodylate/HCl, pH 6.5, 800 mM sodium citrate tribasic dihydrate, 0.05% w/v casein, 0.05% w/v hemoglobin, 0.0005% w/v pepsin, 0.0005% w/v protease, 0.0005% w/v Proteinase K, 0.0005% w/v trypsin, 0.002 M HEPES sodium, pH 6.8 |