6OW4
Structure of the NADH-bound form of 20beta-Hydroxysteroid Dehydrogenase from Bifidobacterium adolescentis strain L2-32
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-17 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.07 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 165.078, 134.710, 96.396 |
Unit cell angles | 90.00, 100.15, 90.00 |
Refinement procedure
Resolution | 103.710 - 1.990 |
R-factor | 0.19 |
Rwork | 0.187 |
R-free | 0.23840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6m9u |
RMSD bond length | 0.003 |
RMSD bond angle | 1.188 |
Data reduction software | xia2 |
Data scaling software | autoPROC |
Phasing software | PHENIX |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 103.710 | 2.045 |
High resolution limit [Å] | 1.990 | 1.990 |
Number of reflections | 73226 | 3662 |
<I/σ(I)> | 6.3 | |
Completeness [%] | 54.3 | |
Redundancy | 4.8 | |
CC(1/2) | 0.995 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 296 | Mutant S181A 20beta-HSDH purified recombinant protein was incubated with 2.5 mM NADH and 0.25mM or 0.5 mM cortisol for 2 hours at 4C. Crystals were grown in condition 86 of the Hampton PEG/Ion screen containing 0.05 M Citric acid, 0.05 M BIS-TRIS propane / pH 5.0, and 16% w/v Polyethylene glycol 3,350. The condition was then optimized in hanging-drop format using 18-20% w/v Polyethylene glycol 3,350 |