Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6OW4

Structure of the NADH-bound form of 20beta-Hydroxysteroid Dehydrogenase from Bifidobacterium adolescentis strain L2-32

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2018-03-17
DetectorDECTRIS EIGER X 9M
Wavelength(s)1.07
Spacegroup nameC 1 2 1
Unit cell lengths165.078, 134.710, 96.396
Unit cell angles90.00, 100.15, 90.00
Refinement procedure
Resolution103.710 - 1.990
R-factor0.19
Rwork0.187
R-free0.23840
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6m9u
RMSD bond length0.003
RMSD bond angle1.188
Data reduction softwarexia2
Data scaling softwareautoPROC
Phasing softwarePHENIX
Refinement softwareREFMAC (5.8.0238)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]103.7102.045
High resolution limit [Å]1.9901.990
Number of reflections732263662
<I/σ(I)>6.3
Completeness [%]54.3
Redundancy4.8
CC(1/2)0.995
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP296Mutant S181A 20beta-HSDH purified recombinant protein was incubated with 2.5 mM NADH and 0.25mM or 0.5 mM cortisol for 2 hours at 4C. Crystals were grown in condition 86 of the Hampton PEG/Ion screen containing 0.05 M Citric acid, 0.05 M BIS-TRIS propane / pH 5.0, and 16% w/v Polyethylene glycol 3,350. The condition was then optimized in hanging-drop format using 18-20% w/v Polyethylene glycol 3,350

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon