6OW4
Structure of the NADH-bound form of 20beta-Hydroxysteroid Dehydrogenase from Bifidobacterium adolescentis strain L2-32
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-D |
| Synchrotron site | APS |
| Beamline | 21-ID-D |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-03-17 |
| Detector | DECTRIS EIGER X 9M |
| Wavelength(s) | 1.07 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 165.078, 134.710, 96.396 |
| Unit cell angles | 90.00, 100.15, 90.00 |
Refinement procedure
| Resolution | 103.710 - 1.990 |
| R-factor | 0.19 |
| Rwork | 0.187 |
| R-free | 0.23840 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 6m9u |
| RMSD bond length | 0.003 |
| RMSD bond angle | 1.188 |
| Data reduction software | xia2 |
| Data scaling software | autoPROC |
| Phasing software | PHENIX |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 103.710 | 2.045 |
| High resolution limit [Å] | 1.990 | 1.990 |
| Number of reflections | 73226 | 3662 |
| <I/σ(I)> | 6.3 | |
| Completeness [%] | 54.3 | |
| Redundancy | 4.8 | |
| CC(1/2) | 0.995 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 296 | Mutant S181A 20beta-HSDH purified recombinant protein was incubated with 2.5 mM NADH and 0.25mM or 0.5 mM cortisol for 2 hours at 4C. Crystals were grown in condition 86 of the Hampton PEG/Ion screen containing 0.05 M Citric acid, 0.05 M BIS-TRIS propane / pH 5.0, and 16% w/v Polyethylene glycol 3,350. The condition was then optimized in hanging-drop format using 18-20% w/v Polyethylene glycol 3,350 |






