6OVD
Crystal structure of GluN1/GluN2A NMDA receptor agonist binding domains with glycine and antagonist, 3-ethylphenyl-ACEPC
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-04 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | .979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.666, 87.237, 122.597 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.850 - 2.102 |
R-factor | 0.1967 |
Rwork | 0.194 |
R-free | 0.24020 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5i57 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.481 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 32.850 | 2.177 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.119 | 0.517 |
Rmeas | 0.133 | 0.602 |
Rpim | 0.058 | 0.300 |
Number of reflections | 34185 | 3090 |
<I/σ(I)> | 8.59 | 2.31 |
Completeness [%] | 98.0 | 90.59 |
Redundancy | 4.6 | 3.5 |
CC(1/2) | 0.993 | 0.521 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 M AMMONIUM SULFATE AND 16-22% PEG 4000 |