6OV3
Crystal structure of human claudin-9 in complex with Clostridium perfringens entertoxin C-terminal domain in open form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-20 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.11583 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 70.981, 114.817, 115.602 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.125 - 3.250 |
R-factor | 0.3013 |
Rwork | 0.301 |
R-free | 0.30770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Homology model and PDB entry 3AM2 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.958 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 70.980 | 3.420 |
High resolution limit [Å] | 3.200 | 3.200 |
Rmerge | 0.127 | 4.941 |
Rmeas | 0.139 | 5.397 |
Rpim | 0.056 | 2.146 |
Number of reflections | 16155 | 2877 |
<I/σ(I)> | 3.9 | |
Completeness [%] | 100.0 | 100 |
Redundancy | 6.1 | 6.2 |
CC(1/2) | 0.999 | 0.512 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 277 | 150 mM sodium acetate, sodium cacodylate, Bis-Tris propane, pH 4.5, 25% PEG1500 |