6OT4
Bimetallic dodecameric cage design 2 (BMC2) from cytochrome cb562
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | H 3 2 |
Unit cell lengths | 126.140, 126.140, 168.210 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 31.540 - 1.400 |
R-factor | 0.1663 |
Rwork | 0.166 |
R-free | 0.19090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3m4b |
RMSD bond length | 0.010 |
RMSD bond angle | 1.101 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.250 | 39.250 | 1.440 |
High resolution limit [Å] | 1.400 | 6.260 | 1.400 |
Rmerge | 0.056 | 0.021 | 1.830 |
Rmeas | 0.059 | 0.022 | 2.004 |
Rpim | 0.019 | ||
Number of reflections | 195424 | 2200 | 14465 |
<I/σ(I)> | 20.3 | 78.58 | 0.84 |
Completeness [%] | 99.4 | 99.1 | 98.9 |
Redundancy | 9.54 | 10.155 | 6.138 |
CC(1/2) | 1.000 | 1.000 | 0.410 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | Protein solution: 2.2 mM protein with 1.65 mM Fe and 2 mM Zn added 1 hour before crystallisation. 1 ul to 1 ul drops with following mother liquor: 30% PEG400, 0.1 M TrisHCl pH 8.5, 0.2 M NaCl |