6OR3
Structure of an Acyl Intermediate of Thermomyces Lanuginosa Lipase With Palmitic Acid in an Orthorhombic Crystal
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 173 |
Detector technology | PIXEL |
Collection date | 2019-03-23 |
Detector | DECTRIS PILATUS 300K |
Wavelength(s) | 1.1158 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 69.865, 85.268, 86.741 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.000 - 1.450 |
R-factor | 0.16355 |
Rwork | 0.161 |
R-free | 0.21143 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1tib |
RMSD bond length | 0.015 |
RMSD bond angle | 1.688 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 60.800 | 1.470 |
High resolution limit [Å] | 1.450 | 1.450 |
Rmerge | 0.334 | 3.600 |
Rmeas | 0.337 | 3.700 |
Number of reflections | 46198 | 2213 |
<I/σ(I)> | 10.4 | 0.6 |
Completeness [%] | 99.9 | 97.8 |
Redundancy | 62.8 | 38.7 |
CC(1/2) | 0.997 | 0.294 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | Using filtered culture media with active fungal cells as the stock protein solution, about 30 mg/ml. Sitting drop equal amounts of the protein stock and the reservoir which was 20% PEG 335 buffered with 0.10 M MES at pH 6.5 |