6ONV
Crystal structure of HIV-1 LM/HT Clade A/E CRF01 gp120 core in complex with (S)-MCG-III-027-D05.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-09 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 66.256, 67.208, 86.449 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.128 - 3.253 |
R-factor | 0.2111 |
Rwork | 0.208 |
R-free | 0.26470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3tgt |
RMSD bond length | 0.006 |
RMSD bond angle | 0.957 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.15.2_3472: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.310 |
High resolution limit [Å] | 3.250 | 3.250 |
Rmerge | 0.213 | 0.866 |
Rpim | 0.108 | 0.513 |
Number of reflections | 4355 | 211 |
<I/σ(I)> | 12.6 | 1.6 |
Completeness [%] | 67.6 | 65.9 |
Redundancy | 4.4 | 4.1 |
CC(1/2) | 0.960 | 0.450 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 294 | 10% PEG 1500 5% PEG 400 0.1M HEPES pH 7.5 |