6OKE
Crystal structure of an apo Transferrin-Receptor-Binding cystine-dense peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-03-13 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.54 |
Spacegroup name | P 65 |
Unit cell lengths | 37.656, 37.656, 190.198 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 26.890 - 2.550 |
R-factor | 0.2237 |
Rwork | 0.221 |
R-free | 0.27920 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 1.427 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.590 |
High resolution limit [Å] | 2.550 | 6.920 | 2.550 |
Rmerge | 0.102 | 0.057 | 0.280 |
Rmeas | 0.109 | 0.060 | 0.337 |
Rpim | 0.039 | 0.019 | 0.183 |
Number of reflections | 5016 | 268 | 209 |
<I/σ(I)> | 7.2 | ||
Completeness [%] | 99.0 | 97.1 | 90.5 |
Redundancy | 7.1 | 9.6 | 2.7 |
CC(1/2) | 0.999 | 0.858 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 5 | 298 | PEG 3350, Bis-tris, AmSO4 |