6OJT
Crystal structure of Sphingomonas paucimobilis TMY1009 LsdA phenylazophenol complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-08-13 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97949 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 181.909, 181.909, 96.431 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 61.004 - 3.000 |
R-factor | 0.2127 |
Rwork | 0.211 |
R-free | 0.24070 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.590 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.3.5) |
Phasing software | PHASER (2.7.16) |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 90.950 | 90.950 | 3.150 |
High resolution limit [Å] | 3.000 | 9.950 | 3.000 |
Rmerge | 0.126 | 0.069 | 0.479 |
Rmeas | 0.140 | 0.076 | 0.536 |
Rpim | 0.060 | 0.031 | 0.236 |
Number of reflections | 34302 | 1097 | 4572 |
<I/σ(I)> | 9.7 | ||
Completeness [%] | 92.7 | 99.5 | 94.4 |
Redundancy | 5.4 | 5.8 | 5 |
CC(1/2) | 0.986 | 0.996 | 0.884 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M sodium fluoride, 17% PEG3350 (v/v), 1 mM phenylazophenol in DMF |