6OCG
Crystal structure of VASH1-SVBP complex bound with EpoY
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-11-14 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 70.671, 126.454, 46.082 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.121 - 1.833 |
R-factor | 0.1792 |
Rwork | 0.177 |
R-free | 0.21870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ocf |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.860 |
High resolution limit [Å] | 1.830 | 4.970 | 1.830 |
Rmerge | 0.056 | 0.031 | 3.541 |
Rmeas | 0.058 | 0.032 | 3.681 |
Rpim | 0.016 | 0.009 | 0.994 |
Number of reflections | 37002 | 2039 | 1811 |
<I/σ(I)> | 50.2 | ||
Completeness [%] | 99.6 | 99.5 | 99.8 |
Redundancy | 13.1 | 12.2 | 13.3 |
CC(1/2) | 0.998 | 0.617 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293.15 | 5% (v/v) TacsimateTM, 0.1 M HEPES, pH 7.0, and 10% (w/v) polyethylene glycol monomethyl ether 5,000 |