6OC8
Crystal structure of a VHH against the capsid protein from BLV
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-07-17 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9801 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 120.560, 120.720, 69.941 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.360 - 2.109 |
R-factor | 0.2107 |
Rwork | 0.205 |
R-free | 0.24070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xt1 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.360 | 60.360 | 2.220 |
High resolution limit [Å] | 2.110 | 6.670 | 2.110 |
Rmerge | 0.138 | 0.056 | 0.666 |
Rmeas | 0.153 | 0.063 | 0.740 |
Rpim | 0.065 | 0.027 | 0.315 |
Total number of observations | 152335 | 4853 | 22554 |
Number of reflections | 29590 | 1019 | 4280 |
<I/σ(I)> | 8.7 | 20.2 | 2.3 |
Completeness [%] | 99.3 | 98.4 | 99.9 |
Redundancy | 5.1 | 4.8 | 5.3 |
CC(1/2) | 0.995 | 0.997 | 0.762 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 | 293 | 2.00 M ammonium sulfate, 7% isopropanol, 15% pentaerythritol ethoxylate |